PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv2_028090_josc.t2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28818.7 Da    PI: 8.9139
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv2_028090_josc.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Bv2_028090_josc.t2  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                        79***********************************************96 PP

2K-box94.91.3e-3182170997
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         + +++ es+++e+ kLk++ e+Lqr+qR+llGedL++L++keL qLe+qLe+slk+iRs+K++ +l+q+ +lq+ke++l e+nk+L+++
  Bv2_028090_josc.t2  82 KPSKELESSYREYLKLKARHESLQRTQRNLLGEDLGPLNVKELDQLERQLESSLKQIRSTKTQSMLDQLTDLQNKEHALMEANKTLKTE 170
                         4578899*******************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.969161IPR002100Transcription factor, MADS-box
CDDcd002651.29E-45277No hitNo description
SuperFamilySSF554551.83E-33283IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-333859IPR002100Transcription factor, MADS-box
PfamPF014869.3E-2784169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.32387178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG  60
PSMLKTLERY QKCSYGGVEV NKPSKELESS YREYLKLKAR HESLQRTQRN LLGEDLGPLN  120
VKELDQLERQ LESSLKQIRS TKTQSMLDQL TDLQNKEHAL MEANKTLKTE QLDRIMVKDT  180
QQFRQTWDGS EQNVHYGQQH AQSQGLFQPL DCNPTLQIGY NPESSEQMTV ATSHTQVPGF  240
LPGWMQGGCF S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A7e-3475168198Developmental protein SEPALLATA 3
4ox0_B7e-3475168198Developmental protein SEPALLATA 3
4ox0_C7e-3475168198Developmental protein SEPALLATA 3
4ox0_D7e-3475168198Developmental protein SEPALLATA 3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694117.10.0PREDICTED: developmental protein SEPALLATA 1 isoform X1
SwissprotP293841e-120SEP2_ARATH; Developmental protein SEPALLATA 2
TrEMBLA0A0J8FSI90.0A0A0J8FSI9_BETVU; Uncharacterized protein
STRINGVIT_14s0083g01050.t011e-135(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-121MIKC_MADS family protein